Basic Information | |
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Taxon OID | 3300020183 Open in IMG/M |
Scaffold ID | Ga0194115_10080993 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1882 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
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Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -6.4446 | Long. (o) | 29.9042 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009600 | Metagenome | 315 | Y |
F011218 | Metagenome / Metatranscriptome | 293 | N |
F033779 | Metagenome / Metatranscriptome | 176 | Y |
F039112 | Metagenome | 164 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0194115_100809931 | F033779 | N/A | SSKAEWKNKIPRNLMNGSTNLKKKKSLLAALTILIVTLAGVSGCRTAQPILESVIVRDTVIVTEPKYLIDTLEVMKDTVIYQDKVRLELKYIDRKVVVEALCEPDTIRVTQTKILTKQEPKKKGWNFNQIVFTLAFILVFAYFIKKWIDRLLE |
Ga0194115_100809933 | F011218 | AGGAG | MSSMQYYTNPAKRRKIDFILAECASLMANCGSSYAERQQAKYKEQELLAQIAKLDYHFAIQCGYQQAD |
Ga0194115_100809934 | F009600 | N/A | MRVPTGGLTAYKVTVSKVPSLNAFYASKHWAVRAKAKDKHCVEVLEQLQEYDCVPIDQVHITCLVNYKYDVDNSIMAVKFALDALKKWGAIRDDSPRYVEQIKLVHSQAIAKDTAEIIFEGHVVD |
Ga0194115_100809935 | F039112 | N/A | MTLSLSQDVYSQTIQAQLAQIQALQSKVDELQARIEVLEQQSHLFI |
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