Scaffold Ga0194115_10080993

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10080993
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1882
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F033779	Metagenome / Metatranscriptome	176	Y
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100809931	F033779	N/A	SSKAEWKNKIPRNLMNGSTNLKKKKSLLAALTILIVTLAGVSGCRTAQPILESVIVRDTVIVTEPKYLIDTLEVMKDTVIYQDKVRLELKYIDRKVVVEALCEPDTIRVTQTKILTKQEPKKKGWNFNQIVFTLAFILVFAYFIKKWIDRLLE
Ga0194115_100809933	F011218	AGGAG	MSSMQYYTNPAKRRKIDFILAECASLMANCGSSYAERQQAKYKEQELLAQIAKLDYHFAIQCGYQQAD
Ga0194115_100809934	F009600	N/A	MRVPTGGLTAYKVTVSKVPSLNAFYASKHWAVRAKAKDKHCVEVLEQLQEYDCVPIDQVHITCLVNYKYDVDNSIMAVKFALDALKKWGAIRDDSPRYVEQIKLVHSQAIAKDTAEIIFEGHVVD
Ga0194115_100809935	F039112	N/A	MTLSLSQDVYSQTIQAQLAQIQALQSKVDELQARIEVLEQQSHLFI