NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10027110

Scaffold Ga0194115_10027110


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10027110 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4188
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F016772Metagenome / Metatranscriptome244Y
F028084Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100271103F028084GAGVKKLILVLPLFLLVSCSEPTYQSIELPSKYPDTPTSGAAYDVTEELYKK
Ga0194115_100271105F010817AGGALKNFVSILALNFLLVGCATITPDKIQDSTASYDSSTPSNYNKDNGGLIAILDNGAVITASAKDRYNKLIEMYKIKFKKEKAIELVENSGVTPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVPADNIIDKTIDKINN
Ga0194115_100271107F016772GGAGMNKLNLIAVALMGIFMIGCSTTNTGGDNQVGGTTAVENALPYIKPAVILACTVVLEQALSPEDRVEKAKMINNIATVVQALTVGQTPTPDQLQKALSDHLPAEKTHWAKYIIAVKDIYAAQFAKLNGDAALAVKVLNAIASGCKDATEEYVE
Ga0194115_100271108F009669N/AMKIMLSKLFGPNWRSSTSGIVTVIAVATAFAIHGDNSLVAFLPDKAEEYIIGLSKLIAVVSGIVFALTVKDAAVTGGKVAQTKEAKKRVKKETGHGENI
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