Scaffold Ga0194115_10024030

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10024030
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4578
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F084138	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1002403011	F084138	AGGA	MANQVTVLEEIVGDVAIALYQKWYNAMPAEENNEVAEKALKKNAQETTLFVIQMFMDKFNQAAEELKNKD
Ga0194115_100240303	F000473	AGGAG	VSLNNSQHFYDNNHFKYGINQWTGEPNKPVFYSEEMKKKIREIKRPMLLLMDIAMYPDFLTIRLYEDNFLQFDGSKKEEVIAYVEKVKKIIESFGVRCELEGVPSARVL
Ga0194115_100240305	F000671	GAGG	MDKILCYSCNKSKHKLNAKKSSLLPINLLMCETCVNSKLEPRWVIILAGRSQGADYVREFVLKKRYLGDEISASELLV