Scaffold Ga0194115_10004253

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10004253
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15572
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F016772	Metagenome / Metatranscriptome	244	Y
F028084	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000425310	F009669	N/A	MKNMLSKLFGPNWRTSTSGIVTVIAVTTAFVIHGDNSLVAFLPDKVEEFIVGLSKLIAVVSGVIFALTVKDSHVTGGDVPQTVEAKKRVQKIEKNLAEKAGKKEL
Ga0194115_100042534	F028084	N/A	VKKLILILPLFLLVSCSEPNYESRELPTKYSESATMGSAEDANRGTLEP
Ga0194115_100042537	F010817	AGGA	LKNFVSILALNFLLVGCATITPDKIQDSTASYDASTPSNYNKDNGGLIAILDNGAVITSSAKDRYNKLIEMYKIKFKKEKAIELVENAGITPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVAADNILDKTIDKINN
Ga0194115_100042539	F016772	N/A	MNKLNLIAIALMGIFMVGCSTTNTGGDNQVGGTTAVENALPYIKPAVILACTVVLEQALSPEDRVEKAKMINNIATVVQALTVGQTPTPDQLQKALSDHLPAEKTHWAKYIIAVKDIYAAQFAKLNGDAALAVKVLNAIAGGCKDATEAYVE