NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194115_10004253

Scaffold Ga0194115_10004253


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10004253 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15572
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (42.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F016772Metagenome / Metatranscriptome244Y
F028084Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1000425310F009669N/AMKNMLSKLFGPNWRTSTSGIVTVIAVTTAFVIHGDNSLVAFLPDKVEEFIVGLSKLIAVVSGVIFALTVKDSHVTGGDVPQTVEAKKRVQKIEKNLAEKAGKKEL
Ga0194115_100042534F028084N/AVKKLILILPLFLLVSCSEPNYESRELPTKYSESATMGSAEDANRGTLEP
Ga0194115_100042537F010817AGGALKNFVSILALNFLLVGCATITPDKIQDSTASYDASTPSNYNKDNGGLIAILDNGAVITSSAKDRYNKLIEMYKIKFKKEKAIELVENAGITPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVAADNILDKTIDKINN
Ga0194115_100042539F016772N/AMNKLNLIAIALMGIFMVGCSTTNTGGDNQVGGTTAVENALPYIKPAVILACTVVLEQALSPEDRVEKAKMINNIATVVQALTVGQTPTPDQLQKALSDHLPAEKTHWAKYIIAVKDIYAAQFAKLNGDAALAVKVLNAIAGGCKDATEAYVE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.