Scaffold Ga0206129_10027472

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10027472
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4159
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019651	Metagenome / Metatranscriptome	228	Y
F033962	Metagenome / Metatranscriptome	176	N
F067130	Metagenome / Metatranscriptome	126	N
F070137	Metagenome / Metatranscriptome	123	N
F080236	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_100274721	F080236	AGGA	MNNIYDKKFEIYLIKKGYDLDCISLNECLKEIKLWKKNTENA
Ga0206129_100274722	F067130	N/A	MQIEIDTVDLQNTLEQLYDRKVKLVAYASADGLDTLVLEGNEEDLFNFYLESFNPFNEWTNTDVVRSEFFAHILTK
Ga0206129_100274723	F070137	N/A	MDLYLKLENNELRNLHENFRDEIWLAFHQGEINDQDEFYTYFHEYIDNAVIYTSQCELILINNSEYHYEDHDLYSRPNNIHQAAYACLHDYLMDHIDTPNWEQMETELNEA
Ga0206129_100274726	F019651	N/A	MTTLEKFQEEANIKFIQAPSHADVEIGELNTADGYELFYITQDVQNLQFDNEVYYYKPDFDTIMNEISNAYTRNEVVNVVCYDIEDWFDEYDMLNWLESEMDEESFEAFTNEA
Ga0206129_100274727	F033962	N/A	MNMTELKQYMADNKRIKVAQWNKEREGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNLWVFNDTKDRELFTK