Scaffold Ga0181556_1093066

Overview

Basic Information

• Taxon OID: 3300020176
• Scaffold ID: Ga0181556_1093066
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1392
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018915	Metagenome / Metatranscriptome	232	Y
F032259	Metagenome / Metatranscriptome	180	Y
F074803	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181556_10930662	F074803	N/A	MIKIELTPQQFNQLYELLVIGMKAGNVNNMKVGLPLVDILEAAAAQHKPE
Ga0181556_10930665	F018915	GGAG	VNWIYQILKALLDFLRETPPTDVQQGKAPEQLKADLADRIADLPRLPDDGGPGPFR
Ga0181556_10930666	F032259	N/A	MLAQPVKASIYSFDKNKKLVGPSTVIIPAGWYALPK