Scaffold Ga0211729_11001577

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_11001577
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3704
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F014849	Metagenome / Metatranscriptome	259	Y
F081245	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1100157710	F003965	AGGA	MNSTIITVCKSHVPNKSAISDVNDEQFTFCEICENNIERWYNDTDPERLPMWTNWQVSK
Ga0211729_110015772	F014849	AGGAG	MLLPTDIIAIIIALLGCLTVVCLFWKQNIAQEKEIRRLRNELRKALKV
Ga0211729_110015779	F081245	AGG	MIDFVKQLELNNYLADEQIDPLEKMLDELILKGEYK