Scaffold Ga0211729_10068623

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10068623
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11858
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F047028	Metagenome	150	N
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1006862313	F023840	N/A	VRDEKGQLHVGLTLEDDFTLTRLKNAAHALKGVDRDQYLWKTIFRFVCRERAFKSVMEEIGVVIDTNIGIFDEEEDE
Ga0211729_1006862315	F008401	N/A	MESARLLTIAQTAELLNCSAGFVRKRISLTESNQPGGWPKGIFVNLQPNGAKSLYRINKDALEAYLSSNEEEAKVEESAACAV
Ga0211729_1006862319	F015724	AGGCGG	VAKHKGSDDFGWHNHQPKKSQFSFKAYEGASSRHQLSTPMPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYSIKSVTQTSGTTYAVQLSSNFGPPISFFTGEILSDRFDSTGAEKTTYNNYVVTGVGNGTTPLTPSFAPIFNSIFISLDTNNSWSVIDNETLAAPASLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYNLKRKYPYTLPQDAKPGQYDAGEDFLSSRESNSRDFPGFTRDFGFLYVKQLLNLPTYTDSSKVYSDPNLIYFAPRWCKHIYATFWDMQNRFGSDMFPPAWLAQPTDEPMDDRYRDEFEINLAKQTTFDKRQQHLRWWEKYSPSRDTVPVHMMYPDMHPTMVKTLNFDTLASGTSSAMTASGFEMFNIDQYDPFAPPDPGVTPKLDGGTYNNGVLVSGAVLIYDGGQYANGALIPYPSYPSLINGGTYLIVFGLISYILHTMGYFTIV
Ga0211729_100686235	F080002	N/A	MVVTTYTSPAYSQTSSSELKRPCLWDEEVRIENLPGWIYTDNQPPGSFKDCQAKISSLEYTIKDIELQIEIRELELKTGSSRHSNAFDFERWKVGALKAKQTHYYLLNAYSYWLIKNTPNVVDTASKLDKLIALLIEDPSDFETKASALLE
Ga0211729_100686236	F085646	N/A	MDQTLKEIKTIREALTSIDISLQLLVSQKEGKVTSAFVSKKTLGQRLNIPSVAIDKLIHQGIVSGGSSGLVEGKHYCKVEPTERNSSKFLYDPHAVMEAAWKNFTYV
Ga0211729_100686237	F047028	GGA	MSDLSRGAAALIKNLFGGNETERMISAGVVRTILSDITRLYFENRAARGEGILVFNPEDPENSKYLTKSELENDLAVAQEGMDEKAEGLFSKVIQVIEKESGSDLALIAMVQSNEIAIHLIDPIEANKKIDELSNSLLL