Scaffold Ga0211729

Basic Information
Taxon OID	3300020172 Open in IMG/M
Scaffold ID	Ga0211729_10044257 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020172 Open in IMG/M

Scaffold ID

Ga0211729_10044257 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16003
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (63.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16003

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (63.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F000506	Metagenome / Metatranscriptome	1070	Y
F002135	Metagenome / Metatranscriptome	590	Y
F024109	Metagenome / Metatranscriptome	207	Y
F046377	Metagenome / Metatranscriptome	151	Y
F048985	Metagenome / Metatranscriptome	147	Y
F083918	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1004425710	F000141	GAG	MTDLCTMVSIWYVLSAIVGNKDITIMHPQFKCNSCKRKTEFLWLEGLDTPDGFKAYQCMDCGAVGVKNIAEALHIPDSDISRCTKCGSWQFLGADCHTCALIGAK
Ga0211729_1004425711	F083918	AGAAGG	MGYAEIIDGSGYLARFENDKITIEPTGDKCMSCNDDRLMHDGKYLVCTQCHCRQ
Ga0211729_1004425715	F046377	AGGTGG	MPQIVSIGSRATVKIQIDLKAADFEQLWINSMEWMGQEWEKQADRFDPKPFYSWHYAYWFDNYAALKMAEGFISSLGKNYAIHSDEGTGDWLMLTNYASPCHLRSKLVNA
Ga0211729_1004425717	F002135	N/A	MATTRKRKKINRRRVRKTPDPLSKLEVFYICKHELYKAARKAGFSESVALYLMDSPDSMPDWVVGDDGIIPRIPTPDEEED
Ga0211729_1004425721	F048985	AGAAGG	MPQTSQVTVTTTPTLLVTANRADQMVYLHAKHTIYVGGPGVTTSTGYLMDNGDKLSMMLSDNESLYGVASNNSGVMQVMVTIN
Ga0211729_1004425727	F000506	AGGAG	MAKLKITRANGEVSEHKITPGVEYAFELKYGSGISKVLREHERQTEIFWLAYECLRRAGVQIPVWGSEFIDTLDTVEVLDEEKK
Ga0211729_1004425730	F024109	N/A	MEDFIVAVVNKLAASTLVLNISSVSAPAITNAASGDLLTSEITVSILTSWS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211729_10044257

Overview

Ecosystem & Geography

Associated Families

Sequences