Scaffold Ga0206127_1133192

Overview

Basic Information

• Taxon OID: 3300020169
• Scaffold ID: Ga0206127_1133192
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 987
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Henriciella → unclassified Henriciella → Henriciella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014373	Metagenome / Metatranscriptome	263	N
F079927	Metagenome	115	N
F105152	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206127_11331922	F079927	AGGAGG	MSKDAREQAQLEDEADEKYLTMYQYFKELTDYERGEYDALHGYPVSDAEESPDYYSGYGDAYAYLQVKGADK
Ga0206127_11331923	F105152	AGGAG	MSREYCRVDDDPSYDYSNYEDKTGYYTPHDDREVDYDPIEQPEMHKRLKEVKTRLGVKQD
Ga0206127_11331925	F014373	AGGAG	MSRCKACDVILKEAELRKKDRVTDEYLDLCSMCHSASDEAIEENWSLAEDNGIIRSNN