Scaffold Ga0206127_1014940

Overview

Basic Information

• Taxon OID: 3300020169
• Scaffold ID: Ga0206127_1014940
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5304
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041192	Metagenome / Metatranscriptome	160	Y
F041441	Metagenome / Metatranscriptome	160	Y
F097348	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206127_101494010	F041441	N/A	MDTKTELLLDYQEMAILALREEVERLTLENKLLTLKLKRNEFV
Ga0206127_10149404	F097348	N/A	MSTLDTLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0206127_10149408	F041192	N/A	MECLHYMSWALKGNHLRVYPVPTKSMYTHKVGKKTVNLSYVKLVIEIGNAKHEGKEIYKQHLMHEKVCEIYKFYYDNHKAKI