Scaffold Ga0206127_1000851

Overview

Basic Information

• Taxon OID: 3300020169
• Scaffold ID: Ga0206127_1000851
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35657
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (40.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016279	Metagenome / Metatranscriptome	248	N
F055556	Metagenome / Metatranscriptome	138	N
F087237	Metagenome / Metatranscriptome	110	N
F092112	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206127_100085115	F087237	N/A	MTKIKEAAEVSLSIYNTIDCYHMPELNRVAHKSLGQVLRSLVELLDNERNRPTDDEPAT
Ga0206127_100085118	F092112	AGGA	MDLRNEIIDVISSIQMLDNHYETIIGEMKENLEAVHLHNKLLDKQNQLLNQKVDALAKHLSVKLEQPDTTIRAVKLDEDVAHN
Ga0206127_10008512	F016279	N/A	MTPSEYLLTNPTSDEHSYNYLLIPAELRDSMIAKQDTLTTSNHISPVLLIDGRYGACCDLYTEVGVGGIYHELWEMLDQAKLDECEVVDKDTFLALLPPDPEPEV
Ga0206127_100085130	F055556	N/A	MKNHKEKTNLDHLVKGGEKIFYSACVVLACCLGGSLMLLVATLIAKF