Scaffold Ga0206128_1016726

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1016726
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4330
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F007892	Metagenome / Metatranscriptome	343	Y
F019836	Metagenome / Metatranscriptome	227	Y
F037230	Metagenome / Metatranscriptome	168	Y
F045764	Metagenome / Metatranscriptome	152	N
F051139	Metagenome / Metatranscriptome	144	Y
F072257	Metagenome / Metatranscriptome	121	Y
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_101672610	F005129	N/A	MTYKVKIAEVNKSFSLSHHSYIDLGVFTVNASTYSFLYPAVKTDWACDINDTELEFLVNNKRCKYVGFKELYTQLYGNSFATFEADLIRQIEEEVAKNIIEEFPGTDVNF
Ga0206128_101672615	F007892	N/A	MGRIIEISPQQDVVNKINAKADFTHNINRTRLERYTVSTQNVLKTANPSLFSKNTWQIVDEAFNSDHELLGGWLSEDDIYFLDYGLSVSDLKKAMKIAKFNKQLAIYDNVANKVIPVAD
Ga0206128_10167263	F019836	N/A	MQKAELELPVKQFHRLYDLLGDLIDYEAEINVFNMESNDIEFLEDIRIELFNQIPDEKTYTDYAVTGRSSNPSIQAGKLYKITEKTSKHGFKLEVEDGEVIYCLFKNCAFLNGRDWTIINVEN
Ga0206128_10167264	F045764	N/A	MKLTDEEIKEIADRMDDLMWEGFHDIVYDVYLQRENCFLDEEISDEDVIKVRKELKKYI
Ga0206128_10167265	F037230	N/A	MKNLTEEYVEIDWSGICEDFDLDSGDISPEQSFEIDRALGNINEVLHKFIEQNKLKVHIGQTTLTNTEHNVLAVALDHMYEHLDDLVGELDTHEEENINLKRKDAVKSLKEMFNL
Ga0206128_10167267	F051139	N/A	MQTAKLKLPVKQFHRLHDLLGDILDHEAETNDFNMDNSDVELMEDIRHELFNQIPDEKPIEITYAFTTASGTPNITPTKLYEVTLRDAGSGFLITNDAGREVFCIEKGCSHLSRLGSKNWNLITITND
Ga0206128_10167268	F072257	N/A	MQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKSWCVSDKGLTAFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISSRDEHAEPCRRNTHCKR
Ga0206128_10167269	F092077	N/A	MTKELSPLQRSFKRINELLPDSDQVLLRCDLYTMCTELTNKSFAEGINTKY