Scaffold Ga0206128_1006281

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1006281
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8543
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006848	Metagenome / Metatranscriptome	363	N
F011489	Metagenome	290	N
F022880	Metagenome	212	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100628110	F022880	N/A	MFFVTGQKRNDRLAICKSCEHFVQSTKSCGPLLTEAFTDSKLCGCHMPTKTRLKVASCELGKWEAEITAEDIDEIQRFLKTENQFRTNGQLAKLYAKATGTNQKPSSCSSCNRRMLEELQKLVNDANR
Ga0206128_100628111	F011489	AGGA	MKLKSRGAWDEFLTRNYSKLLFTARKWTAEPRDLVHHTYLRCIDKRFPSDEDENPLGYFIKAMYNEATRGQFKTIYQIIDAIPEEKETESDWTKAIQREQMQLILDRLSWFDRTVFGLYLQGWNMADLSRRTGIGESVLYRSIHESKKILKDVLRHRTKEE
Ga0206128_10062812	F006848	N/A	MELKLPHRWSDLSLGELQVMMTSENPLERVSACSGKSVAQLRKMPQKLLEAAGEHIDNLLTQETARFEKVLEMDGKRLGFIPDWDAFTAGEWIDLETYLEDFWKNAHKVMAILYREVTYELGESYEIKKYTAKEDASTFEEMPADLVSGTLLFFWTTRNELLHSIQSSLLRVAEEATRLAKSGGGITSSIPSQAKTSSRWTRLRRYLSKLFSNTSHI