Scaffold Ga0206128

Basic Information
Taxon OID	3300020166 Open in IMG/M
Scaffold ID	Ga0206128_1001488 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020166 Open in IMG/M

Scaffold ID

Ga0206128_1001488 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23101
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (12.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

23101

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (12.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F007892	Metagenome / Metatranscriptome	343	Y
F012505	Metagenome / Metatranscriptome	280	Y
F019836	Metagenome / Metatranscriptome	227	Y
F037230	Metagenome / Metatranscriptome	168	Y
F045851	Metagenome / Metatranscriptome	152	Y
F046001	Metagenome / Metatranscriptome	152	N
F061271	Metagenome / Metatranscriptome	132	N
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100148813	F007892	N/A	MGRLTEISPQQNVVNKINAKADFTHNINNTRLERYTVSTQNVFIGKNPSLFLKDTWKIVDDAFNSDQELLGGWLSEDDIYFLDYGLSVTDLKKAMKIAKFNKQLAIYDNVSQKVIPVAD
Ga0206128_100148818	F005129	N/A	MKYKVKIEDRSLSINLMHCSVIDLGIFTVKATTHTFLFEAKDTDWGADINETELEFYVNDKRCKYVGFKELYTQLYGNSFNTWEADLTRQIEEVVAKRIVKEYPGTDVNF
Ga0206128_100148819	F092077	N/A	MTEELSPLKLSFKRINELIPDSHDVLLRCSLYEMCVELTNKSFSEGINTKY
Ga0206128_100148820	F061271	N/A	MIQELDKVVHQWCDDNDRWMYIEYDRDGMVMGLNFMQGDEYECFKKSWCVSDKGLTAFYKQMLYTFATEQKNVPEHCFINSCMWAYHSAISEYEDNNCKIGNAKKCCKAISGR
Ga0206128_100148822	F037230	N/A	MKDLTEEYVNIDWSGICEDFDLEYGDITPEQSFEVDRALGNINEVLHKFIEQNKPKVHIGQTTLTSTEHNVLMVALDHMYEHLDDLVGDLETFEEENINLKRKDAVKSLKEMFNL
Ga0206128_100148824	F019836	N/A	MQKAELELPVKQFHQLYDLLGDILDHEAETNDFNMENNDIELIEDIRTELFNQIPDEKTYTDYAVTGRSSNPSIQAGKLYKIVEQTSKYGFKLEVEDDEVIYCLFKNCAFLNGRDWTIINVED
Ga0206128_100148831	F045851	N/A	MSLQDHNTINELIKFYQKNRSEADYKKGIQPIDGHKIDSLMMANYLAGAKKDPNIY
Ga0206128_100148832	F046001	N/A	MTKILFNTVYKTINQITNSNKLNRPVHITYGGLIVDNSDIETVTKILDREIIKYKLKSI
Ga0206128_10014889	F012505	N/A	MSKFMIYNADEVTFILAKTLDEARQWAIMYCDHSHEIIVREISDIKYKY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206128_1001488

Overview

Ecosystem & Geography

Associated Families

Sequences