Scaffold Ga0206128_1001094

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1001094
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28605
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (28.89%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F014253	Metagenome / Metatranscriptome	264	N
F015079	Metagenome	257	Y
F024541	Metagenome / Metatranscriptome	205	N
F042877	Metagenome / Metatranscriptome	157	Y
F048232	Metagenome	148	N
F063638	Metagenome / Metatranscriptome	129	N
F063642	Metagenome	129	N
F072209	Metagenome	121	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100109410	F048232	N/A	MRTDITYEERVARIMFLREHRRNLLRDYCDETIPKREKNKLRLEIAKVQKALKKLDPDGMFPP
Ga0206128_100109411	F015079	N/A	MVQAQIESIQGKGDWKGRHGTMYTFEIAFNDGTVGEANSKSQEPPYKVGDEVYYEIKSDDQYGKKLKVSKSPPPPGGFQQFQPAKPNPDRDKQIIRGMCFKVAGMAWANQYKHKSFELPHQVMVKGVIALAKEYEQAFNEWMEE
Ga0206128_100109413	F063642	N/A	MEYTSTQLFDEVIQLATPDCIKRRDMTVIRKIKDLQNYTQRLEQIAEDAIATLKEKNA
Ga0206128_100109415	F091789	N/A	MIDWYNFHCRTWREAKRNWGHMMQDKGLQQINRDAPTGYGEAPHLITSKVEGFGFVIYPKGYDPREINHTLSSRASIYGNRYCGSLNSF
Ga0206128_100109416	F024541	N/A	MEFFDMIISQYGSVHKCAAKLGTNREQLLRQIRTGNDQVLNAIADNCRLSRQEVRWEFRYHTERMP
Ga0206128_100109419	F063638	AGG	MLDTLDTLTAVLDTVVTVVTDPIILDPMEPWYVTHYVELIFIVLAAAKAVLNLVPSEKPLVIFGYLDTLIGLIFKDRRK
Ga0206128_100109422	F001668	N/A	MATVYLPVQPIEGMDSAERAEALDAETWRLRRPLSLQSPQDVTKYYYPRITHPETGQVAIVGDTTEEVRISPEVDLTNMLALLPEVPQEEKDGLVMFIDANRGGTVAFGQLIPSTSTQLTEVEAEALGWLPDPIEP
Ga0206128_100109427	F014253	N/A	MILVFKNNSDSVSNTVYITPKEKRGAANVAEYGPTIQALGMELTSLTTNKAVMVNASTVTVTDRFTAFSFDADTVAADTSADLSGPQWPEGFIQYRIVERASSSDVRDITAADVILETGLGYLSRGAQTGILLTESGNSLAKEDGGLLLTEDATTTTEAYQETTYTSAADAAETFTYYE
Ga0206128_10010945	F009330	GGA	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRPDREADEGDGNR
Ga0206128_10010947	F042877	N/A	MIQGILVAIAILTFAQVGAEFYQEHQVRLFNLVVLLLACLALFV
Ga0206128_10010948	F072209	AGG	MVRAWFLAELGRLIKFVDATKTIQDNEELSETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHSGTREERKAILVTVKDLIDLGQIKPPE
Ga0206128_10010949	F009856	N/A	MKYWFDTDDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQGIKEMAEYLPFLTPSKIKRALVKLEEVEAIYRKPNGFDRRHTYCLGTIPDHAWDETEPSISQNRTIDGPNLARVHIETNTSKRTKKDAREELEYQRPTEEEVIEYMEDRGAHELAPTLGPEFWNYYEANGWMVNGTPIAKWKPKVNQWINRERKNQSNDRRKGFNPAGFTPDGLKDFIANG