Scaffold Ga0206128

Basic Information
Taxon OID	3300020166 Open in IMG/M
Scaffold ID	Ga0206128_1000267 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020166 Open in IMG/M

Scaffold ID

Ga0206128_1000267 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	62207
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (5.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

62207

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (5.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F005129	Metagenome / Metatranscriptome	411	Y
F007892	Metagenome / Metatranscriptome	343	Y
F012505	Metagenome / Metatranscriptome	280	Y
F051139	Metagenome / Metatranscriptome	144	Y
F072257	Metagenome / Metatranscriptome	121	Y
F076593	Metagenome / Metatranscriptome	118	N
F092077	Metagenome / Metatranscriptome	107	N
F101482	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100026757	F101482	N/A	MTEEEMNKIVDMIVEQLFIRINDEAKAMNEEFINSLPSNEEQIIELNLLLKHYESIEDYTNAANVFAKIRGLQSGHDKK
Ga0206128_100026760	F012505	N/A	MSKFMIYNADEVTFILAKTLDEARQWAIMYCDHSHEIIVRGISDIKYKY
Ga0206128_100026764	F007892	N/A	MGRLIEISPQQDVVNKINAKADFTHNINNTRLERYTVSTQNVFIGKNPSLFLKDTWKVVDDAFNSDQELLGGWLSEDDIYFLDYGLSVSNLKKAMKIAKFNKQLAIYDNASQKVITVN
Ga0206128_100026765	F076593	N/A	MELTEHQKNELDAVADSVTHYIEDHLRETISWQMPDALVDDLQEDQFMDAMDYAYNKVLQLMTG
Ga0206128_100026768	F005129	N/A	MKYKVKIAEVNKSTNLMHHSYIDLGIFTVNATTHSFLYSAVKTDWGADINDTELEFYVNNKRCKYVGFKELYTQLYGNSFVTWEADIIRQIEEEVAKRIVKEYPGTDVNY
Ga0206128_100026769	F092077	N/A	MNKDLSPLQRSFKRINELLPDSDQVLLRCDLYTMCTELTNKSFAEGINTKY
Ga0206128_100026770	F072257	N/A	MQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKESWCVSDRGLTDFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISSRDEYAKPTPCHRQCTIYKTNTTADR
Ga0206128_100026771	F051139	N/A	MQTAKLKLPVKQFHQLHDLLGDILDHEAETNDFNMENSDIELMEDIRHELFNQIPDEEPIETTYAFTAVSGATNITPIKLYETKPCDDGGGFLITNDAGREIYCLEKGCSHLSRLGSKNWNLITITND
Ga0206128_100026780	F000918	N/A	MYQTNQQAWDEVTREYQDSLRRTEVCQRMFGQDNLIGLTEDQRDLFWAECWKEVF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206128_1000267

Overview

Ecosystem & Geography

Associated Families

Sequences