Scaffold Ga0206125_10056948

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10056948
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1853
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014071	Metagenome / Metatranscriptome	266	Y
F067209	Metagenome	126	Y
F084852	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100569482	F084852	GAGG	MRDLKKFEKDIQNILDKFQFVGETRRKIFSQLMEYASEQDKFNAEQQAGNPQKGNQND
Ga0206125_100569483	F014071	GGAGG	MATRPGRLLDKTFTSFTEASGRLEDTIGWITAAEELANEVQPGCKAEVTLHLLGKVLEKARTELDQASEDLAIEVFGK
Ga0206125_100569485	F067209	GAG	MLEPTDEQVELSMTEWVTKFGDGKNRNETAELAAKFMFAMSYYHDRMRLHILLHPLFFVAGFLSAYYLL