Basic Information | |
---|---|
Taxon OID | 3300020165 Open in IMG/M |
Scaffold ID | Ga0206125_10050877 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2012 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015346 | Metagenome / Metatranscriptome | 255 | Y |
F022282 | Metagenome | 215 | Y |
F062169 | Metagenome / Metatranscriptome | 131 | N |
F063682 | Metagenome | 129 | N |
F105878 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0206125_1005087710 | F015346 | GAG | MKHRLYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGSSVSRQYPVRYLAEL |
Ga0206125_100508775 | F022282 | GGAG | VDPRFRYQLGDLVSWKANRITEDYIGDMILTGIIIEQRYVFTADNKFKVRTPDKDYWIRADHLTLLSSGNKNKT |
Ga0206125_100508776 | F062169 | AGGAG | MSVQDHIENILNAEGQGALDAWYVAINEHPQNAIEIHDVVIDHLVENTFLY |
Ga0206125_100508778 | F105878 | GGA | MKVGQIIKLTPQGLNNFAPGIRKKLDGELGLVIQEKYDLSHKLDQDKLPERVKVYPALVRFESLQNMNFLDMGAVMVFPDQAEIVS |
Ga0206125_100508779 | F063682 | GGA | MKPGDLVRIRKTSIDHMSANWFIWHAEKMTPLVLIKELNKSYWNVLKPDGETVFIHKSHLTKRMY |
⦗Top⦘ |