Scaffold Ga0206125_10050877

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10050877
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2012
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015346	Metagenome / Metatranscriptome	255	Y
F022282	Metagenome	215	Y
F062169	Metagenome / Metatranscriptome	131	N
F063682	Metagenome	129	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1005087710	F015346	GAG	MKHRLYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGSSVSRQYPVRYLAEL
Ga0206125_100508775	F022282	GGAG	VDPRFRYQLGDLVSWKANRITEDYIGDMILTGIIIEQRYVFTADNKFKVRTPDKDYWIRADHLTLLSSGNKNKT
Ga0206125_100508776	F062169	AGGAG	MSVQDHIENILNAEGQGALDAWYVAINEHPQNAIEIHDVVIDHLVENTFLY
Ga0206125_100508778	F105878	GGA	MKVGQIIKLTPQGLNNFAPGIRKKLDGELGLVIQEKYDLSHKLDQDKLPERVKVYPALVRFESLQNMNFLDMGAVMVFPDQAEIVS
Ga0206125_100508779	F063682	GGA	MKPGDLVRIRKTSIDHMSANWFIWHAEKMTPLVLIKELNKSYWNVLKPDGETVFIHKSHLTKRMY