Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10020578 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10020578 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3958
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (63.16%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3958

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (63.16%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F053549	Metagenome	141	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F079212	Metagenome	116	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1002057810	F018286	GGAG	MNMLTTFVLMGVIDSHDGVFATVELNTNPASNGGPATAIMPVAAFPCEIREGRLFYIVKLHEEQDAVIICAEEENEQGRDEPDTCMH
Ga0206125_1002057811	F079212	GGAGG	MSKDETNLIHVCIESHRRMIMQHRRAIIELSRKTIKEREPCKECFDYEIINESGRSSKSE
Ga0206125_1002057813	F059942	GGAGG	VKVGDLISFKPINFGLEDWSNPCIVMSEYESPNEGLWSVWCDGVFCVIDDTNYEILHLTG
Ga0206125_1002057814	F053549	GGA	MKVGDLVKWENALNDSMDHHREDHGIVVKMSRTGHDSESAQILFTDGELWWMDTQKLRIVNEAG
Ga0206125_1002057817	F057352	AGGAG	MKLWVLHGTYESEMFTSIHLTEKGCALAAIADILDFLSVDDEESALQVINDCYTYTGTDGEQTEAFEWDHDKMKEMSSKDLWKIFGDWTGTCWERMSDRSYYIDATPQMVQA
Ga0206125_1002057818	F101902	N/A	MKVGNLVKRRDDHFHRGIVMEIGPVETANDHQMSCAKIRWGDGELTIEFIKLLEVISEAR
Ga0206125_100205788	F030886	AGG	MSYHDQPLGYMRSGIGVVNPLIRIENKLKKVQEVLDNISDASILTANDLKTKLQKVLDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10020578

Overview

Ecosystem & Geography

Associated Families

Sequences