Scaffold Ga0206125_10017903

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10017903
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4395
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035317	Metagenome / Metatranscriptome	172	N
F049627	Metagenome / Metatranscriptome	146	N
F070126	Metagenome / Metatranscriptome	123	N
F084839	Metagenome / Metatranscriptome	112	N
F104911	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001790311	F084839	AGG	MNRPYKYVTVLDYSNGQVYLYDYDETKMPNAANFVELRHDLDDVNYMVHQYKPALWTKNVYYCTKEQAYQLTNENEL
Ga0206125_1001790312	F070126	N/A	MRLYQLYTYCREVIEKYPELADEVMQHFALAEMECEDDCSSEEHEVELSLTDINNAIADYELQK
Ga0206125_100179035	F104911	GAG	MKTPINFQDYLNFRKDQVAHDMFRVLYNDLSAAGQEEVNDEVATEFIKIFHLLYAQE
Ga0206125_100179037	F049627	N/A	MKLIKYTAAALALASCASNTQLYEVTHVIAESDSTIDVWSSNAFVRTDIQVTRDSIHFFEALGEFNKMIKTESIDFTNVLDITDSSLTIQQPDQVTTYLLFNLQNHYE
Ga0206125_100179039	F035317	N/A	MTEMKLYMQRCEELRKQQMAERHAEATDEFGFCSGTTYKEWTAKTGMKGVSRKGKNFSHTKLWDYRG