Scaffold Ga0206125_10015333

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10015333
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4936
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010615	Metagenome / Metatranscriptome	301	Y
F048838	Metagenome	147	Y
F060720	Metagenome	132	N
F085166	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100153334	F048838	AGG	MNVIIEGLNLSNKQLIDLRAAIKARYTPEKVKALNARLKATEGK
Ga0206125_100153336	F060720	AGGA	MKNEQQSLSIEDRYWEVDFFADKLRRAGELIAERSITQDFCKEMQEEAIAALEAIYERASLLRYYLKEIRDSVEAEEDRELTRIQEEAVKRLNKGIKELASKLNT
Ga0206125_100153337	F010615	N/A	MQTIQLEGIELRPNKYFDITVEAEAVTTHCESSSEAGESQVTEAWEERDLDGFEIVSLVYWPNEDTPVDLPTIVLTHDDRATIYEETLRYI
Ga0206125_100153339	F085166	N/A	MTEEIEKEEEVLKRTADEVLHFIAEQQLRFIWVRPMIPEAKESTLGQDTLIIIDQNNIELFAGRYFADSEQRIDVLREGVEFIMDQEEL