Scaffold Ga0206125_10013580

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10013580
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5416
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012285	Metagenome	282	Y
F056889	Metagenome	137	Y
F063165	Metagenome	130	N
F068144	Metagenome	125	N
F080623	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100135801	F063165	N/A	KKYKALCLSPYEDFTAAGEATRKKAPYFLINVAGRKEISDSHKKLKETKYFDNFSKEEKKKLKV
Ga0206125_1001358014	F012285	GGA	MYHENNKSFLVFGKQLNQIIAMLQMISDRNPDIQKLNEFIQYLKDLNPYEDMLNGFIYGDQKTIPDEKRAVGKRDSMTLEEMMDDLQLKFMDKRNGKQD
Ga0206125_100135802	F068144	AGGAG	MWHEDKKYYLLSGQQLNQILMMLQMISDRNPDIEKLNEFIRNLKDLRAYNDILDEFIFSDQKKMPDEIKPVGEKDSMTLEEMLAGLELRLMNGRDKDNGKN
Ga0206125_100135804	F056889	GAG	MKNLSHEEQITLILIGIAIGIGIGFVLKVFVDSYIIIERLPL
Ga0206125_100135807	F080623	AGGA	MNKENTNIDQIIVDLIMDHYNVQSIQGKVEALSSKDFDKICDVAESIFLKKVAIQETPAL