Scaffold Ga0206125_10011182

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10011182
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6288
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009493	Metagenome	317	N
F047926	Metagenome / Metatranscriptome	149	N
F051114	Metagenome	144	Y
F084220	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001118210	F051114	N/A	MRNKVIDKVLEENAKLFQQLGTDSTKAEVQAAKVQERKNLRAVRAENPELVGRLLNDGDK
Ga0206125_100111822	F084220	N/A	MDYLSRELEEYQYRIDTTCEKCGESTDPDYYDCNCSDEEE
Ga0206125_100111823	F009493	N/A	MRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKGQLGYNKRAPYNSFRVTAYVRYRYDLDNSIIAIKFTSDALKTLGWIKDDSPKYFRRLLLVWSEQIPKDEAQITIELSDENP
Ga0206125_100111826	F047926	N/A	MYIEIAKNTWAYAKDEKDAERIRAKYKDYKKKQGDLISRHFIVNYIEETNFIK