Scaffold Ga0206125_10011091

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10011091
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6323
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F010001	Metagenome / Metatranscriptome	310	Y
F090989	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100110911	F090989	N/A	VDANSTVDNPVQNAGTVPIVHVKSAMPGPNSFWVLYGQHTKPTYLEDAGNGQQAQRDAALQYIKQWRVCL
Ga0206125_100110916	F000464	N/A	MRLYSHAPGPHDHDSDFEDEFWPIMGILFAIICVWTGIVHFIDWATLNVIPWWAEPFTIAPVVFLLIMKEKYDSLNPLHWWPMFWGYQAKLPDEDRITIRPTDVERIMQQHGGPINVHIIDFEHIKFRRKKDAVIFGLRYF
Ga0206125_100110917	F010001	AGG	MARENNVKLLKAQIGNLEVQVADYQQIVKELSDKLKLYEQKHGTVFKRSRNISNQR