Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10009419 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10009419 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7140
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7140

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F028003	Metagenome / Metatranscriptome	193	Y
F059330	Metagenome	134	N
F077798	Metagenome	117	N
F081356	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000941912	F002747	GGAG	MAKDVRYFVDVCLEIYVPDQGCGEQALNNESKDANWFANEICNQIPKAINKNFKYSERPYSVNDATFVKQQRG
Ga0206125_1000941913	F006347	AGGAG	MIEKIKNLIETLEQEINDGYNTLPDYETNNEGKTYINGAQATLYELQKQLETLEQGLRLGKNFSLLGEND
Ga0206125_100094192	F077798	N/A	MTDISKKFKLIIENEEIFKSNPGAMTRLKHLVDTKKSFKHISKEEIEALYIYLMRHNLPQ
Ga0206125_100094195	F081356	GAGG	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKIXCFLNLHYIYYXKN
Ga0206125_100094196	F028003	AGG	MQVSQASGFDKYIIMCDKGQSKLTSDYLSYLKFKEVQNALVKISQTPGKTYMFGGEIHEKGMTCAQADRVLDDIFNCKTSMEMMSHIVRVARQIGFHEITPPRKIRWHQL
Ga0206125_100094199	F059330	N/A	MTDKQIIEKTKNWLWELTEPNEKFGGFGICPFLKKELTNDDMKFIILRGQGFKSGLDNWIKENKYNSVLFICLGEIWEHIERKPYQKALQNTMKESGYKDYKALCFSPNEDKTAAGVKTRENAPYFLINIMDSKDLGKAHKKMIDTKYFDNFTKDELVDIKIYGKKTKKALDINEKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10009419

Overview

Ecosystem & Geography

Associated Families

Sequences