Basic Information | |
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Taxon OID | 3300020165 Open in IMG/M |
Scaffold ID | Ga0206125_10007971 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8102 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (20.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016663 | Metagenome / Metatranscriptome | 245 | N |
F028771 | Metagenome / Metatranscriptome | 190 | N |
F062669 | Metagenome / Metatranscriptome | 130 | N |
F073566 | Metagenome / Metatranscriptome | 120 | N |
F104955 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0206125_1000797117 | F073566 | N/A | MDYSKSIEEIRNKTINLLLEFTDNKNVSNYLRDVDRELERLDSAISREPKVGWVAIDDMMWDMLKEDTNLTRVCVEFKVREEKDYLHANKRNININLVD |
Ga0206125_100079713 | F016663 | GAG | MGKLRTYNVEAAKQLADKFVQITGLDLTSTSRHQEQAYFRALFYKVMCDINGMNDRMISEWFGDIGVKRNRSSIFHALRKIDVYYESFVRFRNVYDLFFDDRKKERERIENKKSERVRIINERIDRKLDASDRNKIHELADVIPEDRIDEMYEMMTLRMKSWAWKSKDKCEVIQSSTSMDGMCW |
Ga0206125_100079714 | F062669 | GGA | MAKKKKTSFNYYKTNNEAQSHCFKKGYVIYPEAFEGSWRVSIELGHRKHTYPEILSLTEAYIKIWKEYEKIQNRDNNGKT |
Ga0206125_100079715 | F104955 | GGAG | MPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI |
Ga0206125_100079717 | F028771 | N/A | MSFLRGNIGESLWLNELSKTHTDIEKAPNKKFYDWDIKANYKGSEVTYEVKYDSKGYYYADRYSRPVNLYIEFQNTKKEEDSGIIASKATYYVYILKSLEGVETAYVFKRLDLLNHLRNNDVKVKGNSFGGDNNAKGWTPPLNSLEHLIVKKIKFI |
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