Scaffold Ga0206125_10005151

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10005151
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11188
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F008590	Metagenome	331	Y
F012507	Metagenome	280	Y
F025414	Metagenome	202	Y
F026439	Metagenome	198	Y
F037480	Metagenome	168	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000515113	F012507	N/A	MWTDKLKIGDLVCSRSDNKPAIILDTAETARAKYGDLANKRMEFKLHIDGQQGWLDEVKLRALYKLP
Ga0206125_1000515116	F004771	GAGG	MKRIKKGDLVKMHTHDTGLVGIVVDRHPKAISTTRPQIGIMWIGGSGKVDWEPEPWLEVVSES
Ga0206125_1000515122	F008590	AGG	MKVGDLVTYWYQRPRWRKGQSVHVGLIIETGKFSGNRDVKVLWTNEPEPLTECSQHLSLVDKPLTT
Ga0206125_100051513	F025414	GGA	MQVGSLVRETMDGNIGVILAWENDGWLVNFPKHGMVFHMLPRLLEVVDASR
Ga0206125_1000515130	F026439	AGGAG	MASNLDTVTLWETAREQFIDLILPMIQEDEQNLGHVDIPARSEAWSNFVDALHYSGSISDWQVSNWEHPDCCND
Ga0206125_100051514	F106118	GGAGG	MQVGDLVRCTTVDGKPVGLVVERFFFVSEPRTHTDIFYVLIPGYEDPFPIRTRQMELVNANR
Ga0206125_100051517	F037480	N/A	MWRLSVQVGDLVHMPGAIEKATGIILRTKPDGINRGTPRLERVKVYWIEDAEASWEPKKWLAVINPSR