NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10002460

Scaffold Ga0206125_10002460


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10002460 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19514
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (33.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F015402Metagenome / Metatranscriptome255Y
F016004Metagenome / Metatranscriptome250Y
F019682Metagenome / Metatranscriptome228Y
F024651Metagenome / Metatranscriptome205Y
F070147Metagenome / Metatranscriptome123Y
F097387Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000246027F019682N/AMLVVLESVGSVLNTKQGIIYPQNADGSYDKNFSISLVEDEVNAEWYKELSTEDYELIKPF
Ga0206125_100024603F070147GGAGGMKDVLLLILEAASVDIKRRCEQNSDEESRDTYGKWHGQIITMINTIKNGGIK
Ga0206125_1000246032F024651GAGMYNNATFVDKEQLKNLKKMDNFVKDNMVRFTEEVGMQCREVITKIIEKGHYYEGEAEVLNMIANEYNQWKREQR
Ga0206125_100024604F016004GGTGGMNEELLKILETLKEDFEMLQDGSWDLNYSDGSEIEASLDNVEKAINIVKNNE
Ga0206125_100024605F006200N/AMSKKEDWLEELVKKYSVPTNDKIEKRGILNESQLKNLKDGKN
Ga0206125_100024606F015402N/AMGRTKNFLDGLNLNEEELNEELYSRADEDYQYQKWLESKEFVEYVNGELDSTRPKYSEHDIMSATRYASEYVTIEPSEVGKKVYDMLFSEKIEEYLTCKTDVWITKNT
Ga0206125_100024609F097387N/AMKQIVLFLIIMVLMGFTISTNQKENSWEQKYHEVKKERDYYKKASEKLLENWKGCEEKLVEVIDE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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