Scaffold Ga0206125_10002169

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10002169
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21120
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (83.64%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Associated Families: 18

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F010950	Metagenome	297	Y
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y
F017285	Metagenome	241	Y
F018286	Metagenome	236	Y
F019158	Metagenome	231	Y
F025414	Metagenome	202	Y
F030886	Metagenome	184	Y
F037480	Metagenome	168	Y
F053549	Metagenome	141	Y
F059942	Metagenome	133	Y
F079212	Metagenome	116	Y
F086310	Metagenome	111	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100021691	F008590	GAGG	MQVGDLVTYSFQRSRWRKGESVSLGLIVETGKYTANRDVKVLWTDQPEPETEASQHLSLVDKSLTT
Ga0206125_1000216911	F017285	AGGAG	MSWSGTVTCSHCYRQGHNKRKCPQLTEEIKDRYIGAMSMAAKERAAGNENDATWYDERAEYQRQRYLKRTKIDLATGEKVTNKASKAARMKSVTCGYCHKTGHTRRTCKAVKMDKQVFVEETRRTRIAALETARVTGIGLGSMIPIRSSGYDVEGEWRSDMLTLRYVKSIAWDACTSSSRFLAVYHVEARKIADPNTARWTSCDQITKLVQVHDAALRYAAAENEPAPMSSLVPTLDPPKGWLQPTEQSLAKAIKREFPTTGTKYNKQRGYDYAYPSGVTKEVIRDLGLEEHYEMSY
Ga0206125_1000216912	F086310	GGCGG	MQVGDIVKHFLTEQIGIVLTVVVSKPRRSIGSVQVMWTTQGDSLFGAGTKEWCGEESLEHLTTA
Ga0206125_1000216913	F037480	GGA	MQVGDLVHMPGAIEKIMGIVLRTKPRGHLQKDRVEVYWIEDAEASWEPIKWLAVINASR
Ga0206125_1000216915	F025414	GGA	MQVGSLVRETMDGNIGVILAWEADGWLVNFPKHGMVFHMMPRLLEVIDANR
Ga0206125_1000216919	F004771	GAGG	MRSRPRVGDLVRMHTHDTGLVGIVLERHPKAISTTPAQLGIMWTGGSGKIDWEPESWLEVVSESR
Ga0206125_1000216920	F019158	N/A	MTIVIDSEDTQGIDAALKIARLMHVKYVGTAAAHKESFGKIEFIKMLRKFMKESIEHLNDEDSDQVKDIGDMGNLRNAKRFADRMFRGER
Ga0206125_1000216924	F010950	GGAG	MMNIWVVRQTCLYDNESYVSSHLTEKGALITAIKTVRSDMCDGIDEDEMEDMRPGLPHNPEEDLMQYSSEQLRGIVEDWWEYSWDINEAAQYQIYETQVEA
Ga0206125_1000216925	F005547	AGGA	MKVWVMQGSYEGEMFSSVHMTQKGCALACITDILDFLSVDDRDSALSVMRDMYAYTENEKAIQTAEEPFEWDHNKLKEMTSEQLWKIFADWCEMSWDRMADRSYNLDANAVEIQA
Ga0206125_1000216927	F059942	GAGG	VKVGDLISFKPINFGLEDWSNPCIVMSEYESPNEGLWSVWCDGIFCVIDDTNYEIMYLTG
Ga0206125_1000216928	F101902	GGAGG	MRVGNLVKRRDDHAHHGIVVEVGPQETAIDHGSTVAKVQWNDGDLTCEFIKMLEVLSESR
Ga0206125_1000216931	F053549	GGAGG	VKVGDLVKWENVLNDSMDHHREDHGIVVKMSRTGHDSESAQILFTDGELWWVDTQKLMVVNEAGG
Ga0206125_1000216933	F079212	AGGA	MSRDEEELIDRCIESYYNMIRYHRRQIIELSRRKIKDERCMECFDFEIINESGRSSKSEE
Ga0206125_1000216934	F018286	GGAGG	VKVLTTFILVGMIDSHDAHFATVELNTTPASNGGPATAVMPVSAFPCEIYEGKVFYVVKLHDEQDATIVCQKDVEDEP
Ga0206125_1000216935	F030886	AGGA	MSYHDQPPSYRKTGIGVVNPLIRIEQKLRKIQDVLDNISDASILTATDLKTKLQKVIDDD
Ga0206125_100021694	F009562	AGGAG	MLTAIPLIRTDDDSNLTPIERTAIGCEQMITALMMAATMADPQVTEAEREVYTTLSVATIVPAEA
Ga0206125_100021695	F014672	GAG	MPKFNIGDLVKIKDGTHQDTLPVHRTGMIVEVGETSKSYTKAYTIVFLGTDIHLKFHEMFLEHLTPS
Ga0206125_100021698	F012507	N/A	MWTDRLKIGDLIWSRRDDKPAIIIDSAETARAKYGDLANKRMEFKLHIDGQQGWLDEVKLRALYKLP