Scaffold Ga0206125_10000296

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10000296
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66241
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (91.67%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F015400	Metagenome	255	Y
F019233	Metagenome / Metatranscriptome	231	Y
F020606	Metagenome	223	Y
F022555	Metagenome	214	Y
F054842	Metagenome	139	Y
F059941	Metagenome	133	Y
F062169	Metagenome / Metatranscriptome	131	N
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000029610	F015400	GGTGG	VLGFVVLASLLIYFYRLLKPSDDKIEYLEAIKAEATVALKENELRGRLEKDKIGAIKGVFESRLEDTKKIDDREERLKALIRLHKELDI
Ga0206125_1000029612	F020606	N/A	MKKIVALILLSSLNAAAAEVTKFEPRPAVVEQEGSTYVGILLSEEDFRKMLEKKIETIAKLSECSVDQKVCSQMQVTYIRSITKLEEQLKKNNSWFDRNRGTLGIVTGLVIGTGLSVGIVHAVYQK
Ga0206125_1000029648	F019233	AGGAG	MATLNFIMPRELQEGFCNREAKQNKVKHAWVPSGQTRAIFGDQIAIECYCKHCNKREWTQTSRFEFEMLQDYWEELR
Ga0206125_1000029659	F054842	GAGG	MSKNEWRKDLKVGDLVMMKSGGMAILTEVFFRFPETDPSYPHIKMIYCDDNTPGSCSAWRVEELINASR
Ga0206125_1000029663	F062169	GGAG	MSVQDHIENILNAEGQECLDAWYVAINEYPQNAMEIHDVVVDHLVENTFLY
Ga0206125_1000029665	F006867	AGGAG	MLYGKELAQSIQKRCKIQPGMLVKSSAGTEVNKIALVVRLSPACEFDRDYEGSEDHIFYICEPCDGTPAFSDYVTNMEQVS
Ga0206125_1000029666	F059941	GGA	MKLGTLVQFAAYGAVMDTGYVSKYDEDPKFMWVECVKMGPQRVSKDSTMLEVLSEAG
Ga0206125_1000029667	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIKELNKSYWNVLKPDGETVFIHKSHLTKRMY
Ga0206125_1000029668	F015346	GAG	MEHKLYNIGDLVAVASNRVLGIITKSNYWALDEYLGGEIEMVDVMFGSSVSKQYPVQYLVEMR
Ga0206125_1000029671	F006383	GGAGG	MRDKMWEVQQPGTLLRARSSHQYGKLALVLQEAYAGPTPSNGYPPRQYVKMQWLATGERFEEMLTNAHNCFDIVGSCDTLGPEEN
Ga0206125_1000029672	F022555	AGGAG	MAITPKFKPGQLVEYADPDWSLVGLVKSTQFARRRGDPVFVLVQWCGKYRNNEEYIPQSELKLVEGS