Scaffold Ga0206125_10000134

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10000134
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97993
• Total Scaffold Genes: 130
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (72.31%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F017322	Metagenome	241	Y
F018814	Metagenome	233	Y
F022523	Metagenome	214	Y
F026159	Metagenome	199	Y
F028524	Metagenome / Metatranscriptome	191	Y
F039876	Metagenome	163	Y
F043975	Metagenome	155	Y
F077384	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000013416	F005620	N/A	MLGLLILQICTPDKSSKGKKMSEEQLFEKQIETFKTFCKNNRLRLREAGDGLPVARAIGKFKEDQFFCNFRNGTIGVYVTRETQRQFTYLNKKLIKMGCIPTQLGDFEASYDLEWMNIPPVAKLLKIKKGAAKVKDPKWLREL
Ga0206125_1000013419	F014071	GGAGG	MATRPGRLLDKTFTSFTEASGRLEDTMGWITAAEELAHEVQPGCKAEVTLHLLGKVLEKARTELDQASEDLAIEVFGK
Ga0206125_1000013420	F028524	AGG	MTTINNEFKTTVKEFVSKLTTIENEMTILRQDRSELFTEMKSKLDPRSFRAAVKIHNLQKSTPDQTSLNRILEVLDTAE
Ga0206125_1000013435	F018814	GAGG	MDSTKSFVKVFNVSPETAEDFEFDYDTNTSDLLTELVPDLDNWGGLGWMELEEYEYNHHNKTMHLILDTKWEPPTMWLQCASSGTHYFQNKLITMATIQKDETCVTGVAVMDGETLQNKCIFDMSSEEVGKYYNDSETDFELDHLDNQIWDSIGKFVNVCEQFYLEKEEKND
Ga0206125_1000013438	F026159	AGGA	MKKFNLIDIITMLGIAASILLILMFASGCSMKFYKKSTEDVRKCCERVSLHQKQMAQFTRYCKVALFLANSENKKEVGNGVRKGARDAVNVCKFVFGVDSDEDLLAAGDRQDYYKVRSYIYTKDDPSGRWHPPQCDPAEIHCEEF
Ga0206125_1000013447	F022523	AGG	MKIGDLVQFTYGRVGGQIERIGIFAERGYYGIHKVICENRIYWVPEDCIKLISMKRKGDVNDFNIN
Ga0206125_1000013449	F077384	GGA	MFQKGDFIVEYQRVDRTGGINFGVVMGAEKGFQDMIVLDVVFPTERLYTFASHCQPYKDWLNENGF
Ga0206125_1000013452	F039876	GGAGG	MIYKSLFLLVFANLFNQAYQLENISCPKWVPGTNEILPAGVTLSPELELKNRVRCYCEVVKAKEQECATMRIPWNICKARTAAWVEDNLMLRENFRRAQAPAPLPQRDRMINIEP
Ga0206125_1000013457	F017322	N/A	MEQWRKFLKEGISDVVYHYTNGLERGAKILEQNRFMASGGFTKDVESELGKGKLYYFSTARTPANAYTGNYPQGVIFKLDGRALGQKYKGVPLDYWATKKRSSKKAANPDPGETEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFEKGMFDDEPKRKAGSAIEAYQMKGLRDGVAIAEQRNIPYYIHIDKQTFPFVEVGKKKALTSLAAFMEEVEKSGVTVNEPRDQASVYKSRSGAEFGEDEVFLYVQAAQDILAGKERFEGASVKDKVGYRDEAERKREGTVMFRNLTGSPNMYGRFYREIDNSLHNVSSNPKARKTLEMLASLMRSTKQKTLKDFENYLNQVYKQNHPDGDPTGYRNT
Ga0206125_100001348	F043975	AGGAGG	MKPRKGDLVYLPSDIMLIDNHTVKKWIKLEEPTYAVMVEPQINKEDIYHKVHVKGNDWLVRTIDTMEVMSRA