Scaffold Ga0211735_10122210

Overview

Basic Information

• Taxon OID: 3300020162
• Scaffold ID: Ga0211735_10122210
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2187
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 8 to 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008415	Metagenome / Metatranscriptome	333	N
F027426	Metagenome	194	Y
F028431	Metagenome / Metatranscriptome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211735_101222102	F028431	GGAGG	MHNKKTIILNGLDVVTNRKMISLKLNVWKKLISCSRHEDVPISKLIDKLITKYIDDSSYDIEKIFNDNLEVKQDVLTSLIDYNFNTQEQIEYK
Ga0211735_101222103	F008415	AGG	MTSIQQLQEHIKRLNDEKLLNQFDLYNTYQVKDIKEVIYYRLVECELENRRLLTHKLMEDDYEYAQ
Ga0211735_101222106	F027426	AGGAGG	MFNRSDLNALLATVIIILLGYAAMHLLVFLDGYYKLSIY