Scaffold Ga0211726_11042234

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_11042234
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1454
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014140	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_110422342	F014140	N/A	MDVELEVTAFNETDARDYVGDIFNIDDEIKKVSIVKITEKK
Ga0211726_110422344	F012975	GGAG	VLNLTLKGVEVFIERSKTKSQESYWDNYDLLIWKQNPGGFTNVKGMFRKHSWGITERIPVNEQGIWKLPSKYVKHFK
Ga0211726_110422346	F000473	AGG	MEFINKDKDHFKYGINEWTGEPNKPVFYTAEMAKRIREIKKPVMSLQMDIVRYPEFLAIRLYEDNFLQYEGIKKEMVIDYVGKVKKIIESYGVRCELE