Scaffold Ga0211726_10476530

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10476530
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12830
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041756	Metagenome	159	N
F088784	Metagenome / Metatranscriptome	109	Y
F101020	Metagenome	102	N
F105044	Metagenome	100	N
F105161	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1047653014	F101020	AGG	MNQVIKTTEGYMVELSNGDYACDANGDNTWDTFNEARDVILGLTTTKQEETAHTFGMHYAYVNPSMTKHYERKEIASTFYTPKSKVWYAFIRGMERNERFPVIAKGAKADIRGVLKRLTESADKYIEDGSWIEALSKDIADAKYIMEHNL
Ga0211726_1047653019	F105161	AGG	MLSDVDIRDFDKQPVTPLYSVKPKSYIQMPNTGVVFYFDHIDGMYSYCLDMFGDTIHLAAWVDVIPLVKKPE
Ga0211726_1047653029	F041756	AGGA	MKMHELENLIMAAWITKEDIDSILWVLMDREKKPDEDELANLLIGLHSLHDARMTKLFQAYDTVLKTNKITYKGYDFPKNPSTL
Ga0211726_104765303	F105044	AGGA	MVLTTPEQINAYRLRVLRQGLKAEMRGMRLTAKGQTCYAILKGMGYKGTKQQVFDAVTIDSENALAEAMAS
Ga0211726_104765309	F088784	GGAG	MERIMKAKYKGICCKTGAPINVGDIVVYDTVTRKVWLTVDIDRMVVHVCCK