NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10263422

Scaffold Ga0211726_10263422


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10263422 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2727
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023346Metagenome / Metatranscriptome210Y
F039627Metagenome / Metatranscriptome163N
F045085Metagenome / Metatranscriptome153Y
F079812Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_102634223F079812N/AMSTKYIMDGSNRKIGYVKDSGSVIYAHGPNGENVGYYQKSTDTTFDRRGKRYGFGDLTNALVFEAVRKI
Ga0211726_102634225F039627N/AMTASFYKTVYQRKFEELPRWKKLAIVEDSERNNWSGLLTEFIKDVIEEAEKEYANSRSTVSNTPVEYVTESGNKSKKTIKKKN
Ga0211726_102634227F023346N/AMNNINKNIIITYAKALRTIQKEQIDPYIELIEKELIKLFPELEHREDNALNWAYDILNAESNAEVVETLNRVEKIITEERKETWNCNYCGKNTYNDDVEYLFGTNHIGCALEDDIKNREHSDPDYILDARLRKICDLETELRETKRAIVNMELKLEHMRSDYHHEPTN
Ga0211726_102634228F045085N/AMSKIINLTVGLIFGSIFAISLILVLMIFFAVLIPVLFYFTVKEVLKYLTKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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