Scaffold Ga0211726_10229466

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10229466
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2086
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F025737	Metagenome / Metatranscriptome	200	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_102294663	F001460	GAGG	MLGYTESDLNKMINAVHDAKLFYLRTPSDLMDKTELRTDLEMAVSFLQGLWAEGYFDHTD
Ga0211726_102294664	F050154	GAG	MKIYLISLNQDLEDNYNVQSKINIQGQIMATEHLLSVATDIMNKSNERVNV
Ga0211726_102294665	F000263	AGG	MMNAEDIGLPPHLQRMVNADVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLTELYKLTYDLSFAIGIRTENRKDGHI
Ga0211726_102294667	F025737	GGA	MKPADKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGMGFSLEYGAE