Scaffold Ga0211733_10441809

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10441809
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1743
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009683	Metagenome / Metatranscriptome	314	Y
F014613	Metagenome / Metatranscriptome	261	Y
F056187	Metagenome / Metatranscriptome	138	N
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_104418094	F014613	GAG	MLPNLSDEAVVGIIFGVPFLGLYLWALWTSAKAKAFNDGYKRGRSSVRYTEIVK
Ga0211733_104418095	F009683	N/A	MMDIREEGQVSDTQKSLNEWLEEAGNTLFDRGIEYGDPRHNLLRIYKISKALGIQLRDPSDLAIIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSTPEDWDDIESDSQS
Ga0211733_104418096	F059096	GGA	MTPAVWKVQSETPLRKAQVRFYCQPCADDVQNWPDGTFYSLKEQLEDAINDFAGREKLDVQLP
Ga0211733_104418097	F056187	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVNTCDVYIIKTELYRTEADANPWT