NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211734_10786163

Scaffold Ga0211734_10786163


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10786163 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2353
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022823Metagenome / Metatranscriptome212Y
F038566Metagenome / Metatranscriptome165Y
F059676Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_107861631F038566N/AEYFTMSVNSFYCYNDFYQCNNNCNSFNIILKNNVDNISGSQTFDLLVGNPNVNDIISYINSVLQPANVLSCTYDNIKNKITFTRLIPQTTTNDTFYINTLKAGNFLGFKNDTEILISFSGTTSTYPININTITALSIGIDGDISFSHNNMESNLNNSVYKASDLIFQTAVNVPKGYLITYQNIDGGDSFKYTLGNNDRIKYFILSVYDQDGNTISDMTDYIIHIQFTINKKSQQEQLLKSLIDYNKQSYLIIGHIFDILNNIYNYFFKIKSNV
Ga0211734_107861632F059676N/AMIYIMPSVKGIGYTNYSSRPMEKTTSMNKQVADHGNKAHYNKVGK
Ga0211734_107861635F022823N/AMENVINDIKVIEEDLENVEKKCEKVNCMALYDAVMATFKLIYDLFFCCCKKKD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.