Scaffold Ga0197142_1000729

Overview

Basic Information

• Taxon OID: 3300020153
• Scaffold ID: Ga0197142_1000729
• Source Dataset Name: Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30590
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (71.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Nevada
• Coordinates
  • Lat. (^o): 40.6614
  • Long. (^o): -119.3661

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011084	Metagenome / Metatranscriptome	295	Y
F020180	Metagenome / Metatranscriptome	225	Y
F020182	Metagenome / Metatranscriptome	225	N
F096802	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0197142_100072927	F020180	GGAGG	MNERVKYWYTARCSCVKPIIYQERDRYPQRCARCGGHLYSEPRAFHFERLSHTPIVDVRALLRLLGLGVLAVLALLWMAMVFIVFGGQP
Ga0197142_100072930	F011084	AGGGGG	MRIKIHQNGYGDTIVCAEIEMRGRFDLVPAENWRELEPEARAYLEARGVKVSEMGTFECPEQIAARAKFGFELFWAQSGLFIGEALAEYRRRVLGEVDYARFAITNNLSPRTVELLEKYGRIPRRADTRARIERAYRLPAGFLNEFDG
Ga0197142_100072943	F096802	N/A	LRYLHRHPLELSHLPAEAFIDLAALALAEAEAYEDAAGEL
Ga0197142_10007298	F020182	N/A	MLHARYTACISSVSIGEIVSAVREERLQDAVRMLMQRECMVTVYARRVLRAELDGRIALLAPWDSAPALTRKLHALFGLPAPHEPCRDCPERGGFTS