Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10925824 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10925824 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40136
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (68.60%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

40136

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (68.60%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002935	Metagenome	519	Y
F011386	Metagenome / Metatranscriptome	291	Y
F014849	Metagenome / Metatranscriptome	259	Y
F017131	Metagenome	242	Y
F021757	Metagenome	217	Y
F030765	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1092582428	F017131	AGGAGG	MAFPSTYNFSYYRGDTGQFVVRPKNSSDGSAFDLSGYDAIFTIANVRGSAGVQYSDADGITAVVNDVTNIVTCTITPAGGRDLSAGSYVYDVQIDNGTQIQTLLTGTITVTDDITGAV
Ga0211736_1092582434	F011386	GAG	MKVTLTSMLGNTKDINLMTKQEVYDFISLYRSTLKENQRVKVTCDLLGIDGYLQGVAQ
Ga0211736_1092582442	F021757	AGGTGG	MMTRKDYVAVAEIISSYKDLIGDEFVVEDLVEDFSAMFEADNPNFKHEVFREACLK
Ga0211736_1092582443	F014849	GAGG	MILDNSTLIAIVIALGSSLVTMILFWKQNVELTKENYRLRNELRKALKA
Ga0211736_1092582450	F002515	N/A	MKKTQEELRRLMELRRSNAASAVPNKKKYNRKKSQTLMLKLNKESE
Ga0211736_1092582457	F002935	AGGA	MRERSTGYIGQIVDGKKLAVIANGIYSLQYSNDFSPCTVDNLLFITLEEKNVYGDNKYALVCSEGVGWEQDTFGCLEVPTNIGAMGLWNGRVFISVDTVKECLTDQTEDIADYIRVFGDRLDNNCSLWQSKMSVVKDTIEV
Ga0211736_1092582458	F001507	N/A	MTTRHRPYTISELIEAIYEDHYSHFDFIDEMNSGECYCQIHTTMNTIVKYWGE
Ga0211736_1092582475	F030765	GAG	MDTEKQFDQEFDLEEITKAIVDQAKSDVKSRFGNKKRHRQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10925824

Overview

Ecosystem & Geography

Associated Families

Sequences