Scaffold Ga0211736_10839808

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10839808
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12575
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026551	Metagenome / Metatranscriptome	197	Y
F030766	Metagenome / Metatranscriptome	184	Y
F031491	Metagenome / Metatranscriptome	182	Y
F041189	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1083980812	F041189	N/A	MFSTKGQEVKTGGGVAKSLQAGVVYAHIYSALVRESRNTGKKMLELTLEGPAMEGFEGWAIDKDNQEGPKYTGQSSRVSASIWIDSFNDANLAKNEIMYKLSVIAAELGLKDELDGITASTIEEWVAKVISLVKGHNLYFFLKGVEEEYNGKTIIKLSLPKYKFVADDADKLDKFDKNNQYHYKALNNKTVGSFEPVADDFSM
Ga0211736_1083980814	F031491	N/A	MSTFSTANQTVVDDQKEFKRMKLDAIRTYHKVLIQDLGIPVTDFNMKMPFYNSRGEMVVGIFASEFKKEKGFFFELITRDLEPASAERTVYRIPPTATFDDEFELNERGSYLVPLEELRTVNPSSVAISKSSAVTSSDPIFSTATVAPKVTAYKAPSPMEDAPYAEMTIRDYYAIQTGKPVSTKVWLNELIKSTK
Ga0211736_1083980819	F030766	N/A	MAKKFYAQKDALGFPIPGTMMSVKSPSPIPANTIEIPAANVAPTGQQVVVKQPSGLRYFVRKNADGSILPNSLIISLQQPKGSVYEFKLVK
Ga0211736_1083980825	F026551	AGG	MAKGKSDSRKISFGKRKGGKASKTSGPRDKAVSKYRGQGR