Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10672575 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10672575 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23113
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (70.59%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

23113

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (70.59%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F013888	Metagenome / Metatranscriptome	267	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1067257515	F071247	GGAGG	MGSNNKIPFNPTVIKNGRIVRIRKDGSIKADLGPYKSKKKVKK
Ga0211736_106725752	F002501	N/A	MWCQKCKGRVFVDRVFSQKLHIELFCILCGKRWMINKETNRFGKWLEKKDQAYAKSSSIS
Ga0211736_1067257523	F013888	AGAAGG	MATIGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLELCDEVRISTRSEWVPIIQNMDMNVKIMVREPSTMSDAVKYMVGDYNDTVLVGMPDTFILNSSSNIYKGLFQENNADLVLGIWECVDALKGRVGQVLVSNNKVVDSEDKADNCNYLDMWGTMLFQNNMIRFIDPKLDHPGKQLKEWISQGFNIKAVRPGGQYMDIGTLRGLKQLYKEME
Ga0211736_1067257527	F000376	AGGA	MSEYQEKAKECKCCGKHVPLPTVLKEYNGMVVCPTTFSNIVEYQRIWNAIGSRPPGNIRKHFSEYVQQIVELHFIENKKDEK
Ga0211736_106725753	F001464	AGG	MVRKKRSGIRKKFLYFFLNDKLHKVIRSSRAKDELVAWSYLDKKRVLYSFSDVQKNMETAYTMKQAGQILGRHKVTIEEYILQGKISRPQKVYPISNPDSKWYKFMFSESSILKLHEYILEAGYSKNLPSKAELKALLKNNMILYTKTVDGFVPVWKAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10672575

Overview

Ecosystem & Geography

Associated Families

Sequences