Scaffold Ga0211736_10535504

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10535504
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1217
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003579	Metagenome / Metatranscriptome	478	Y
F005113	Metagenome / Metatranscriptome	411	Y
F013396	Metagenome	271	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_105355041	F003579	N/A	IAPYTMGSPAQPKVGTQFEVRYVQYTSPTAVADCHLLDAEGVEIMPVGLVPATAEQCADWVNDDKFAEVLAVNAGFELPEE
Ga0211736_105355042	F005113	GAGG	MTKDEHKSAIVSQLQQQSLNLLVDSLAAALAEIETLKAAAADKPTP
Ga0211736_105355043	F013396	N/A	VTLRRSILVALLALGLVVVLGLALRSERVLTAGLPLRIVTKSQQEARTLAGLGAVAVLGTGSMAPYIAAAPKGSDPLATVMAYVVTVQGATIADVRAGSLCIYVPEWAGRHVMHQAASFADGGWIMTGLGTKSYETTERMTGRNFVGIVARTYIWP