NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10510482

Scaffold Ga0211736_10510482


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10510482 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11695
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (93.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F008303Metagenome / Metatranscriptome335Y
F015970Metagenome / Metatranscriptome250Y
F022157Metagenome215Y
F042184Metagenome158Y
F052471Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1051048213F022157GGAGGMWDVLVTFMLMAFGAFVVIAFGAILIWVLYLLQNEVDHE
Ga0211736_1051048219F015970AGGAGMEFDKAKWEAYQQLNDDDIMEAIAGSVAIPLAIKSDDWEYAQHFIKERIENKMQRMAEFAFYSIIKTPSIDADDELRTLRTLWLRDEYKGNR
Ga0211736_1051048220F042184AGGMEFDIELYDFDLDIKAWVEWEYDPEYSPNEGLYNKFNWVAYLQVGNTRVDITDELSAKDSKHIERQIEESCDDGI
Ga0211736_105104824F052471AGGMIRKIRTFYGRQKGQHGNKKTTVDMGVAWLCEKCGEVILYEHLTPKHFCKRLIKPVVLGDTGSSLPP
Ga0211736_105104826F008303GAGGMLDRLILGAVLGTIGWQGISPDTPQPLTQAQLRVQAKEKSISEMCDRKPKSKTAKDLCRRWRKHNA
Ga0211736_105104827F002420AGGAMTFRESTIKYVKDIMRARTIHEVIAKELQEAHLRKLEAETAAEYAIAAIQYNEERIARLENRLSKHTREGDYA
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