Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10247649 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10247649 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13063
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (61.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13063

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (61.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005206	Metagenome / Metatranscriptome	408	Y
F016253	Metagenome / Metatranscriptome	248	Y
F016961	Metagenome / Metatranscriptome	243	N
F020137	Metagenome / Metatranscriptome	225	N
F022877	Metagenome / Metatranscriptome	212	N
F048263	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1024764914	F048263	N/A	MALENFLQNAANFATGGLYNNLSGREKELQQQKLAEAEAFRINPELVREAAKYDPSIMERLGNLLTGGIYGQASGMNDKLEQRSMAMKQIRDEELQRRMEDRMNQYRMGPVQEPVGSELNPDRSMASPPVAPGTLRKKNTFAGGY
Ga0211736_1024764917	F020137	N/A	MSVHPTNIEAAKLLREHWPTCSEWTDEQILNWIGIFNAKKLIGIVKNDEGKCVGVGAVRFLNSIEESEDLNNNFPDGHIAWIEIAIGTEPCAVQTLWLAMMRLCSKKVTKLGGFRKGISRLYDFDRYFKLLMNKRISYGRNI
Ga0211736_1024764918	F022877	N/A	ARSWLGYWDNWIVNDFIPTSFGTFGPVLMFAGDIVSVSAGAGQVWSFNDYLPNTRLSPVSSSAYTDGGADYQSTVITKAYNLSEPIPDKIGYSVQFAFDNPYTTATTTAEVSLAKDMSDTFVTLDSALAITSSQKFLKAYNLISQGRWNTLQFKVTADAGRLSLQSTILSGFVDSVRPQQ
Ga0211736_102476495	F016253	GGAGG	MSDKIRNIIDGGTGVYSISKKEAGEIHKAAKKVKNHEVSYWTRNRKKKEAK
Ga0211736_102476497	F016961	AGGA	MFDPMSTALTIMGMAILLPFCVIAGIYVGHSLTIRSQQTNENKPNNSRM
Ga0211736_102476499	F005206	N/A	MTFKVDRASAEVKPFAGPGEYTVTVNSCKDDGLDKNGNAVATLRYKGPAGEIISDRFVLKDTMMWRLQALISATEANIADGDEFDFSVGGAFLRFLQGFVGLSLVIVIEEERYTDKFGAEQTAFRVRRMKKLPVDLDAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10247649

Overview

Ecosystem & Geography

Associated Families

Sequences