Scaffold Ga0211736_10230306

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10230306
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3654
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F006885	Metagenome / Metatranscriptome	362	Y
F028423	Metagenome / Metatranscriptome	191	Y
F045545	Metagenome / Metatranscriptome	152	Y
F070870	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1023030610	F006885	N/A	MEYLLVIGLTLCLCWSIIKVSNKKRIAFLKKIKYRQSDIHEMIKNVIPKQRFDKPKFITQSQRHVQKNMLRVVIEKNKAYWILNNVFYTADAIDGRVDENTARPLDVENMSKVELDRMLSILDDLKQGVGPDDSGSTGNKRV
Ga0211736_1023030611	F028423	N/A	YMDNLEKNELIQLISFYKQKLSDVELESLKLQLEINKLNSMVLSLSKESVKKTK
Ga0211736_102303062	F070870	GGAG	MKKKTKIIILIFLSFLTAVSLWTAANFKKISDLDIFNIEED
Ga0211736_102303063	F045545	GAGG	MIKQIVLFFICKFKSHSLVDAGSCPFTGKNYVACIRCGATITK
Ga0211736_102303064	F003688	N/A	MYTDVMRKAVHSITPPKGFGVEIIDNEHFLTVKLDERKFLHMVHDDKISALQYVVKLKKALEECGAIVLVTREAVK