Scaffold Ga0211732_1581030

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1581030
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2052
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F014140	Metagenome / Metatranscriptome	265	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_15810302	F077310	N/A	MNVSTSQIILAILASILSGFGTALYGSIRERKKEAFRAQEKIQTDLKLELKDLEIKLYQLEKDLHEWKSKYYEAIQELIAVKAELEDTLIKLSHIQIHLNEG
Ga0211732_15810303	F000671	GAGG	LIEKILCYSCNKNKNKLNLKKSSLLPINLLICETCIDSKFEPRWIIILAGRQMGSEYVREFVVKKRYVGNEISASELLV
Ga0211732_15810305	F000473	AGAAG	MFIDKSKDHFKYGINQWNGEPNKPVFYTKDMAQKVREINKPVFDLLMDIVMYPDFLAIRLYEDNFLQYEGTKKEMVIDYVNKVKALIQSYGVRCELEGAPSERIL
Ga0211732_15810308	F014140	N/A	MNTYKVKLDVEIEVEAFNQEDASEYVHDIFNLDDEIKKVSIVKIAQK