Scaffold Ga0211732_1465241

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1465241
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1904
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F004924	Metagenome / Metatranscriptome	418	Y
F075696	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_14652412	F004924	GGAG	MQDLYKQQILTKLAEVEAMLLDATCDGEQLAELDCFSEVDTALSTLVQAVDYYVD
Ga0211732_14652413	F075696	GGAG	MQDTKSKIDSLMLQLQAVLEDAEMGEHETIQNAFNALACALDEEVV
Ga0211732_14652414	F000354	AGGAG	MTKVNYDRFASFDINEACDHFDSEKQSNWKKIGKFIVADGQDYAHIMETEFDFEDTGAHEYEAFQAGVKYALTKMNIAFEAAAVDLQICEVDLVESMGFIMVRADDEPEDFVKRVMKKPVMMVDSWV