Basic Information | |
---|---|
Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1465241 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1904 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000354 | Metagenome / Metatranscriptome | 1244 | Y |
F004924 | Metagenome / Metatranscriptome | 418 | Y |
F075696 | Metagenome / Metatranscriptome | 118 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211732_14652412 | F004924 | GGAG | MQDLYKQQILTKLAEVEAMLLDATCDGEQLAELDCFSEVDTALSTLVQAVDYYVD |
Ga0211732_14652413 | F075696 | GGAG | MQDTKSKIDSLMLQLQAVLEDAEMGEHETIQNAFNALACALDEEVV |
Ga0211732_14652414 | F000354 | AGGAG | MTKVNYDRFASFDINEACDHFDSEKQSNWKKIGKFIVADGQDYAHIMETEFDFEDTGAHEYEAFQAGVKYALTKMNIAFEAAAVDLQICEVDLVESMGFIMVRADDEPEDFVKRVMKKPVMMVDSWV |
⦗Top⦘ |