Scaffold Ga0211732_1372540

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1372540
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5291
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002515	Metagenome / Metatranscriptome	552	Y
F011487	Metagenome / Metatranscriptome	290	Y
F025743	Metagenome	200	Y
F045755	Metagenome / Metatranscriptome	152	N
F045756	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_137254011	F000447	AGG	MGYIEIFRIDKDGAGWIDLAQANKDELFNIEVGLLNEGALFTTKEAD
Ga0211732_137254015	F025743	GGAGG	MSDTINLMELVYADLLTPAQLMEDDLVEIEGVIVDVVSIADDATGDNYTITYRNEFGEEDVFECNYEHVFKLYVFVEQEEE
Ga0211732_137254016	F002515	N/A	MKKNAEELRRLMELRRSNAASAVPSKKAYNRKKCQSELIEYKYQQKGE
Ga0211732_137254017	F011487	AGGAG	MGNIADEFYDENYDEYYATTCPECNENSVDEYEEKCTHCVLEEMSATYNEDIALEMSLGLDY
Ga0211732_13725402	F045756	AGGAG	MTKYNVLISYVVEAEDEMRAVFALNKSLYPLSENEIAKFNAFHVEESK
Ga0211732_13725407	F045755	AGG	MQQIAGMWICDNCDTLAIVSVGTDTLNITQCQCVQLSKTNN